References

Afzaal Muhammad, Saeed Farhan, Shah Yasir Abbas, Hussain Muzzamal, Rabail Roshina, Socol Claudia Terezia, Hassoun Abdo, Pateiro Mirian, Lorenzo José M. , Rusu Alexandru Vasile , Aadil Rana Muhammad (2022).  Human gut microbiota in health and disease: Unveiling the relationship, Frontiers in Microbiology, Volume 13, DOI=10.3389/fmicb.2022.999001,ISSN=1664-302X

Albert, A. Y., Chaban, B., Wagner, E. C., Schellenberg, J. J., Links, M. G., van Schalkwyk, J., et al. (2015). A study of the vaginal microbiome in healthy Canadian women, utilizing CPN60-based molecular profiling, reveals distinct Gardnerella subgroup community state types. PLoS ONE 10:e0135620. doi: 10.1371/journal.pone.0135620

Allen, E. K., Koeppel, A. F., Hendley, J. O., Turner, S. D., Winther, B., and Sale, M. M. (2014). Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge. Microbiome 2:22. doi: 10.1186/2049-2618-2-22

Anderson, C. A., Boucher, G., Lees, C. W., Franke, A., D'Amato, M., Taylor, K. D., et al. (2011). A meta-analysis identifies 29 additional loci associated with ulcerative colitis risk, increasing the number of confirmed associations to 47. Nat. Genet. 43, 246–252. doi: 10.1038/ng.764

Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., et al. (2011). Enterotypes of the human gut microbiome. Nature 473, 174–180. doi: 10.1038/nature09944

Asmaa Abd Ali Alrifai and, Ammar K Jasman (2024). Characterization of Bacterial Isolates Klebsiella oxytoca from Burn Wound Infections, Microbial Bioactives, 7(1), 1-6, 9639

Bassis, C. M., Erb-Downward, J. R., Dickson, R. P., Freeman, C. M., Schmidt, T. M., Young, V. B., et al. (2015). Analysis of the upper respiratory tract microbiotas as the source of the lung and gastric microbiotas in healthy individuals. MBio 6:e00037. doi: 10.1128/mBio.00037-15

Bengtsson-Palme, J., Angelin, M., Huss, M., Kjellqvist, S., Kristiansson, E., Palmgren, H., et al. (2015). The human gut microbiome is a transporter of antibiotic resistance genes between continents. Antimicrob. Agents Chemother. 59, 6551–6560. doi: 10.1128/AAC.00933-15

Blaser, M. J., Chen, Y., and Reibman, J. (2008). Does Helicobacter pylori protect against asthma and allergy? Gut 57, 561–567. doi: 10.1136/gut.2007.133462

Blekhman, R., Goodrich, J. K., Huang, K., Sun, Q., Bukowski, R., Bell, J. T., et al. (2015). Host genetic variation impacts microbiome composition across human body sites. Genome Biol. 16:191. doi: 10.1186/s13059-015-0759-1

Bonder, M. J., Tigchelaar, E. F., Cai, X., Trynka, G., Cenit, M. C., Hrdlickova, B., et al. (2016). The influence of a short-term gluten-free diet on the human gut microbiome. Genome Med. 8:45. doi: 10.1186/s13073-016-0295-y

Botero, L. E., Delgado-Serrano, L., Cepeda, M. L., Bustos, J. R., Anzola, J. M., Del Portillo, P., et al. (2014). Respiratory tract clinical sample selection for microbiota analysis in patients with pulmonary tuberculosis. Microbiome 2:29. doi: 10.1186/2049-2618-2-29

Brooks, J. P., Edwards, D. J., Harwich, M. D., Rivera, M. C. Jr., Fettweis, J. M., Serrano, M. G., et al. (2015). The truth about metagenomics. Quantifying and counteracting bias in 16S rRNA studies. BMC Microbiol. 15:66. doi: 10.1186/s12866-015-0351-6

Castellarin, M., Warren, R. L., Freeman, J. D., Dreolini, L., Krzywinski, M., Strauss, J., et al. (2011). Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res. 22, 299–306. doi: 10.1101/gr.126516.111

Charlson, E. S., Bittinger, K., Haas, A. R., Fitzgerald, A. S., Frank, I., Yadav, A., et al. (2011). Topographical continuity of bacterial populations in the healthy human respiratory tract. Am. J. Respir. Crit. Care Med. 184, 957–963. doi: 10.1164/rccm. 201104- 0655OC

Chen J., Wright K., Davis J. M., et al. An expansion of rare intestinal microbes of a distinct lineage characterizes rheumatoid arthritis. Genome Medicine. 2016;8(1):p. 43. doi: 10.1186/s13073-016-0299-7.

Chen, Y. E., and Tsao, H. (2013). The skin microbiome: current perspectives and future challenges. J. Am. Acad. Dermatol. 69, 143–155. doi: 10.1016/j.jaad.2013.01.016

Clemente, J. C., Ursell, L. K., Parfrey, L. W., and Knight, R. (2012). The impact of the gut microbiota on human health: an integrative view. Cell 148, 1258–1270. doi: 10.1016/j.cell.2012.01.035

Consortium, T. H. M. P. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207–214. doi: 10.1038/nature11234

De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., et al. (2010). A comparative study in children from Europe and rural Africa reveals the impact of diet on shaping gut microbiota. Proc. Natl. Acad. Sci. U.S.A. 107, 14691–14696. doi: 10.1073/pnas.1005963107

de Steenhuijsen Piters, W. A., Huijskens, E. G., Wyllie, A. L., Biesbroek, G., van den Bergh, M. R., Veenhoven, R. H., et al. (2016). Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients. ISME J. 10, 97–108. doi: 10.1038/ismej.2015.99

Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C., Yu, W. H., et al. (2010). The human oral microbiome. J. Bacteriol. 192, 5002–5017. doi: 10.1128/JB.00542-10

Dickson, R. P., Erb-Downward, J. R., Freeman, C. M., McCloskey, L., Beck, J. M., Huffnagle, G. B., et al. (2015). Spatial variation in the healthy human lung microbiome and the adapted Island model of lung biogeography. Ann. Am. Thorac. Soc. 12, 821–830. doi: 10.1513/AnnalsATS.201501-029OC

Ellis, R. J., Bruce, K. D., Jenkins, C., Stothard, J. R., Ajarova, L., Mugisha, L., et al. (2013). Comparison of the distal gut microbiota from people and animals in Africa. PLoS ONE 8:e54783. doi: 10.1371/journal.pone.0054783

Fallani, M., Young, D., Scott, J., Norin, E., Amarri, S., Adam, R., et al. (2010). Intestinal microbiota of 6-week-old infants across Europe: geographic influence beyond delivery mode, breast-feeding, and antibiotics. J. Pediatr. Gastroenterol. Nutr. 51, 77–84. doi: 10.1097/MPG.0b013e3181d1b11e

Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., et al. (2016). Population-level analysis of gut microbiome variation. Science 352, 560–564. doi: 10.1126/science.aad3503

Farzana Akter Mony, Md Moshiur Rahman, Md. Abdur Rahman, Dr. Nusrat Kabir, Birupaksha Biswas, Md Anwarul Islam, Moushumi Afroza Mou, Debashis Chandra Das (2024). "Isolation and Identification of Pathogenic Fungi from Street Foods in Dhaka City: Antifungal Sensitivity Patterns and Effects of Star Anise Extract", Microbial Bioactives, 7(1),1-10,10014

Feng, Q., Liang, S., Jia, H., Stadlmayr, A., Tang, L., Lan, Z., et al. (2015). Gut microbiome development along the colorectal adenoma-carcinoma sequence. Nat. Commun. 6:6528. doi: 10.1038/ncomms7528

Fettweis, J. M., Brooks, J. P., Serrano, M. G., Sheth, N. U., Girerd, P. H., Edwards, D. J., et al. (2014). Differences in the vaginal microbiome between African American women and women of European ancestry. Microbiology 160, 2272–2282. doi: 10.1099/mic.0.081034-0

Gao, Z., Tseng, C. H., Strober, B. E., Pei, Z., and Blaser, M. J. (2008). Substantial alterations of the cutaneous bacterial biota in psoriatic lesions. PLoS ONE 3:e2719. doi: 10.1371/journal.pone.0002719

Garrett, W. S., Gallini, C. A., Yatsunenko, T., Michaud, M., DuBois, A., Delaney, M. L., et al. (2010). Enterobacteriaceae act in concert with the gut microbiota to induce spontaneous and maternally transmitted colitis. Cell Host Microbe 8, 292–300. doi: 10.1016/j.chom.2010.08.004

Gerasimidis, K., Bertz, M., Quince, C., Brunner, K., Bruce, A., Combet, E., et al. (2016). The effect of DNA extraction methodology on gut microbiota research applications. BMC Res. Notes 9:365. doi: 10.1186/s13104-016-2171-7

Gonder LY, Aydin B, Ates YC, Parilti DN, Acik L and Cerci A. (2023). Antimicrobial, Antioxidant, Cytotoxic, DNA Protective Activities, and Molecular Docking Studies of the Methanolic Extract of Salvia siirtica Kahraman, Celep & Dogan sp. Nov. (Lamiaceae). Microbial Bioactives, Vol. 6, Article 1.

Goodrich, J. K., Davenport, E. R., Beaumont, M., Jackson, M. A., Knight, R., Ober, C., et al. (2016). Genetic determinants of the gut microbiome in UK twins. Cell Host Microbe 19, 731–743. doi: 10.1016/j.chom.2016.04.017

Hospodsky, D., Pickering, A. J., Julian, T. R., Miller, D., Gorthala, S., Boehm, A. B., et al. (2014). Hand bacterial communities vary across two different human populations. Microbiology 160, 1144–1152. doi: 10.1099/mic.0.075390-0

Ibrahim MS. Hussein and Hajir A. Shareef (2024). Prevalence and Immune Response with Interferons to BK Polyomavirus in Chronic Kidney Disease Patients, Microbial Bioactives, 7(1), 1-7, 9848

Kao, C. C., Hsu, J. W., Dwarkanath, P., Karnes, J. M., Baker, T. M., Bohren, K. M., et al. (2016). Indian women of childbearing age do not metabolically conserve arginine as do American and Jamaican women. J. Nutr. 145, 884–892. doi: 10.3945/jn.114.208231

Kemppainen, K. M., Ardissone, A. N., Davis-Richardson, A. G., Fagen, J. R., Gano, K. A., Leon-Novelo, L. G., et al. (2015). Early childhood gut microbiomes show substantial geographic differences among subjects at high risk for type 1 diabetes. Diabetes Care 38, 329–332. doi: 10.2337/dc14-0850

Krasselt M., Baerwald C. Sex, symptom severity, and quality of life in rheumatology. Clinical Reviews in Allergy and Immunology. 2019;56(3):346–361. doi: 10.1007/s12016-017-8631-6.

Leung, M. H., Wilkins, D., and Lee, P. K. (2015). Insights into the pan-microbiome: Skin microbial communities of Chinese individuals differ from those of other racial groups. Sci. Rep. 5:11845. doi: 10.1038/srep11845

Mahfoudh A.M. Abdulghani, Fouad Saleh AL Suede et al. (2024). Biodegradation as a Sustainable Solution for Environmental Restoration: Bridging the Gap, Microbial Bioactives, 7(1), 1-11, 9377

Martin, C., Burgel, P. R., Lepage, P., Andrejak, C., de Blic, J., Bourdin, A., et al. (2015). Host-Microbe Interactions in Distal Airways: Relevance to Chronic Airway Diseases. Eur. Respir. Rev. 24, 78–91. doi: 10.1183/09059180.00011614

Mohammed A. Dakhil, Mustafa Kadhum Naeem et al. (2024). Synthesis and Evaluation of 1,2,3-Triazole Derivatives of Sulfamethoxazole as Potential Antimicrobial Agents, Microbial Bioactives, 7(1), 1-10, 9663

Morton, E. R., Lynch, J., Froment, A., Lafosse, S., Heyer, E., Przeworski, M., et al. (2015). Variation in rural african gut microbiota is strongly correlated with colonization by entamoeba and subsistence. PLoS Genet. 11:e1005658. doi: 10.1371/journal.pgen.1005658

Mu Q., Tavella V. J., Kirby J. L., et al. Antibiotics ameliorate lupus-like symptoms in mice. Scientific Reports. 2017;7(1):p. 13675. doi: 10.1038/s41598-017-14223-0.

Picchianti-Diamanti A., Panebianco C., Salemi S., et al. Analysis of gut microbiota in patients with rheumatoid arthritis: Disease-related dysbiosis and modifications induced by etanercept. International Journal of Molecular Sciences. 2018;19(10) doi: 10.3390/ijms19102938.

Sayed Ul Alam Shibly, Debananda S Ningthoujam (2023). A Review of Human Microbiomes on the Regulation of  Body's Hidden Ecosystem, Microbial Bioactives, 6(1), 1-10, 9374

Thekra Abdulaali Abed, Anwar A. Abdullah et al. (2024). COVID-19 Infection Patterns and Preventive Behaviors at Babylon University, Microbial Bioactives, 7(1), 1-7, 9741

Xiao M., Fu X., Ni Y., et al. Protective effects of Paederia scandens extract on rheumatoid arthritis mouse model by modulating gut microbiota. Journal of Ethnopharmacology. 2018;226:97–104. doi: 10.1016/j.jep.2018.08.012.